The PHENIX experiment at RHIC has measured the centrality dependence of the direct photon yield from Au$+$Au collisions at $\sqrt{s_{_{NN}}}=200$ GeV down to $p_T=0.4$ GeV/$c$. Photons are detected via photon conversions to $e^+e^-$ pairs and an improved technique is applied that minimizes the systematic uncertainties that usually limit direct photon measurements, in particular at low $p_T$. We find an excess of direct photons above the $N_{\rm coll}$-scaled yield measured in $p$$+$$p$ collisions. This excess yield is well described by an exponential distribution with an inverse slope of about 240 MeV/$c$ in the $p_T$ range from 0.6--2.0 GeV/$c$. While the shape of the $p_T$ distribution is independent of centrality within the experimental uncertainties, the yield increases rapidly with increasing centrality, scaling approximately with $N_{\rm part}^\alpha$, where $\alpha=1.48{\pm}0.08({\rm stat}){\pm}0.04({\rm syst})$.

The PHENIX experiment at the Relativistic Heavy Ion Collider has measured the invariant differential cross section for production of K^0_S , \omega, \eta prime, and \phi mesons in p + p collisions at = 200 GeV. Measurements \omega and \phi production in different decay channels give consistent results. New results for the \phi are in agreement with previously published data and extend the measured pT coverage. The spectral shapes of all hadron transverse momentum distributions measured by PHENIX are well described by a Tsallis distribution functional form with only two parameters, n and T, determining the high-pT and characterizing the low-pT regions of the spectra, respectively. The values of these parameters are very similar for all analyzed meson spectra, but with a lower parameter T extracted for protons. The integrated invariant cross sections calculated from the fitted distributions are found to be consistent with existing measurements and with statistical model predictions.

Back-to-back hadron pair yields in d+Au and p+p collisions at sqrt(s_NN)=200 GeV were measured with the PHENIX detector at the Relativistic Heavy Ion Collider. Rapidity separated hadron pairs were detected with the trigger hadron at pseudorapidity |eta|<0.35 and the associated hadron at forward rapidity (deuteron direction, 3.0<eta<3.8). Pairs were also detected with both hadrons measured at forward rapidity; in this case the yield of back-to-back hadron pairs in d+Au collisions with small impact parameters is observed to be suppressed by a factor of 10 relative to p+p collisions. The kinematics of these pairs is expected to probe partons in the Au nucleus with low fraction x of the nucleon momenta, where the gluon densities rise sharply. The observed suppression as a function of nuclear thickness, p_T, and eta points to cold nuclear matter effects arising at high parton densities.

The PHENIX experiment at the Relativistic Heavy Ion Collider has measured the differential cross section, mean transverse momentum, mean transverse momentum squared of inclusive $J/\psi$ and cross-section ratio of $\psi(2S)$ to $J/\psi$ at forward rapidity in \pp collisions at \sqrts = 510 GeV via the dimuon decay channel. Comparison is made to inclusive $J/\psi$ cross sections measured at \sqrts = 200 GeV and 2.76--13 TeV. The result is also compared to leading-order nonrelativistic QCD calculations coupled to a color-glass-condensate description of the low-$x$ gluons in the proton at low transverse momentum ($p_T$) and to next-to-leading order nonrelativistic QCD calculations for the rest of the $p_T$ range. These calculations overestimate the data at low $p_T$. While consistent with the data within uncertainties above $\approx3$ GeV/$c$, the calculations are systematically below the data. The total cross section times the branching ratio is BR $d\sigma^{J/\psi}_{pp}/dy (1.2<|y|<2.2, 0<p_T<10~\mbox{GeV/$c$}) =$ 54.3 $\pm$ 0.5 (stat) $\pm$ 5.5 (syst) nb.

The PHENIX experiment at the Relativistic Heavy Ion Collider (RHIC) has performed systematic measurements of phi meson production in the K+K- decay channel at midrapidity in p+p, d+Au, Cu+Cu and Au+Au collisions at sqrt(S_NN)=200 GeV. Results are presented on the phi invariant yield and the nuclear modification factor R_AA for Au+Au and Cu+Cu, and R_dA for d+Au collisions, studied as a function of transverse momentum (1&lt;p_T&lt;7 GeV/c) and centrality. In central and mid-central Au+Au collisions, the R_AA of phi exhibits a suppression relative to expectations from binary scaled p+p results. The amount of suppression is smaller than that of the neutral pion and the eta meson in the intermediate p_T range (2--5 GeV/c); whereas at higher p_T the phi, pi^0, and eta show similar suppression. The baryon (protons and anti-protons) excess observed in central Au+Au collisions at intermediate p_T is not observed for the phi meson despite the similar mass of the proton and the phi. This suggests that the excess is linked to the number of constituent quarks rather than the hadron mass. The difference gradually disappears with decreasing centrality and for peripheral collisions the R_AA values for both particles are consistent with binary scaling. Cu+Cu collisions show the same yield and suppression as Au+Au collisions for the same number of N_part. The R_dA of phi shows no evidence for cold nuclear effects within uncertainties.

Background: Heavy-flavor production in p+p collisions tests perturbative-quantum-chromodynamics (pQCD) calculations. Modification of heavy-flavor production in heavy-ion collisions relative to binary-collision scaling from p+p results, quantified with the nuclear-modification factor (R_AA), provides information on both cold- and hot-nuclear-matter effects. Purpose: Determine transverse-momentum, pt, spectra and the corresponding R_AA for muons from heavy-flavor mesons decay in p+p and Cu+Cu collisions at sqrt(s_NN)=200 GeV and y=1.65. Method: Results are obtained using the semi-leptonic decay of heavy-flavor mesons into negative muons. The PHENIX muon-arm spectrometers measure the p_T spectra of inclusive muon candidates. Backgrounds, primarily due to light hadrons, are determined with a Monte-Carlo calculation using a set of input hadron distributions tuned to match measured-hadron distributions in the same detector and statistically subtracted. Results: The charm-production cross section in p+p collisions at sqrt{s}=200 GeV, integrated over pt and in the rapidity range 1.4<y<1.9 is found to be dsigma_ccbar/dy = 0.139 +/- 0.029 (stat) ^{+0.051}_{-0.058} (syst) mb. This result is consistent with calculations and with expectations based on the corresponding midrapidity charm-production cross section measured earlier by PHENIX. The R_AA for heavy-flavor muons in Cu+Cu collisions is measured in three centrality intervals for 1<pt<4 GeV/c. Suppression relative to binary-collision scaling (R_AA<1) increases with centrality. Conclusions: Within experimental and theoretical uncertainties, the measured heavy-flavor yield in p+p collisions is consistent with state-of-the-art pQCD calculations. Suppression in central Cu+Cu collisions suggests the presence of significant cold-nuclear-matter effects and final-state energy loss.

The PHENIX experiment at the Relativistic Heavy Ion Collider (RHIC) has measured omega meson production via leptonic and hadronic decay channels in p+p, d+Au, Cu+Cu, and Au+Au collisions at sqrt(s_NN) = 200 GeV. The invariant transverse momentum spectra measured in different decay modes give consistent results. Measurements in the hadronic decay channel in Cu+Cu and Au+Au collisions show that omega production has a suppression pattern at high transverse momentum, similar to that of pi^0 and eta in central collisions, but no suppression is observed in peripheral collisions. The nuclear modification factors, R_AA, are consistent in Cu+Cu and Au+Au collisions at similar numbers of participant nucleons.

The production of low mass e+e- pairs for m_{e+e-} < 300 MeV/c^2 and 1 < p_T <5 GeV/c is measured in p+p and Au+Au collisions at sqrt(s_NN)=200 GeV. Enhanced yield above hadronic sources is observed. Treating the excess as internal conversions, the invariant yield of direct photons is deduced. In central Au+Au collisions, the excess of direct photon yield over p+p is exponential in transverse momentum, with inverse slope T = 221 +/- 19 (stat) +/- 19 (syst) MeV. Hydrodynamical models with initial temperatures ranging from 300--600 MeV at times of ~ 0.6 - 0.15 fm/c after the collision are in qualitative agreement with the data. Lattice QCD predicts a phase transition to quark gluon plasma at ~ 170 MeV.

The fraction of $J/\psi$ mesons which come from B-meson decay, $\textrm{F}_{B{\rightarrow}J/\psi}$, is measured for J/$\psi$ rapidity \mbox{$1.2<|y|<2.2$} and $p_T>0$ in $p$+$p$ and Cu+Au collisions at $\sqrt{s_{_{NN}}}$=200 GeV with the PHENIX detector. The extracted fraction is $\textrm{F}_{B{\rightarrow}J/\psi}$ = 0.025 $\pm$ 0.006(stat) $\pm$ 0.010(syst) for $p$+$p$ collisions. For Cu+Au collisions, $\textrm{F}_{B{\rightarrow}J/\psi}$ is 0.094 $\pm$ 0.028(stat) $\pm$ 0.037(syst) in the Au-going direction ($-2.2<y<-1.2$) and 0.089 $\pm$ 0.026(stat) $\pm$ 0.040(syst) in the Cu-going direction ($1.2<y<2.2$). The nuclear modification factor, $R_{\rm CuAu}$, of B mesons in Cu+Au collisions is consistent with binary scaling of measured yields in $p$+$p$ at both forward and backward rapidity.

The three Upsilon states, Upsilon(1S+2S+3S), are measured in d+Au and p+p collisions at sqrt(s_NN)=200 GeV and rapidities 1.2<|y|<2.2 by the PHENIX experiment at the Relativistic Heavy-Ion Collider. Cross sections for the inclusive Upsilon(1S+2S+3S) production are obtained. The inclusive yields per binary collision for d+Au collisions relative to those in p+p collisions (R_dAu) are found to be 0.62 +/- 0.26 (stat) +/- 0.13 (syst) in the gold-going direction and 0.91 +/- 0.33 (stat) +/- 0.16 (syst) in the deuteron-going direction. The measured results are compared to a nuclear-shadowing model, EPS09 [JHEP 04, 065 (2009)], combined with a final-state breakup cross section, sigma_br, and compared to lower energy p+A results. We also compare the results to the PHENIX J/psi results [Phys. Rev. Lett. 107, 142301 (2011)]. The rapidity dependence of the observed Upsilon suppression is consistent with lower energy p+A measurements.