The invariant yield versus transverse momentum for |y| < 1 in 0-60% centrality in Au+Au collisions (solid circles). The results are compared to high-$p_T$ (3 < $p_T$ < 10 GeV/c) results from STAR [9] (solid squares) and PHENIX data [8] (open squares). Also shown is the yield in 0-60% centrality Cu+Cu collisions for low $p_T$ (solid triangles) and high $p_T$ [48] (open triangles). The models are described in the text [49, 50]. The $J/\psi$ cross section in p+p collisions is also shown at STAR (stars) and PHENIX [51] (diamonds), and the scale is indicated on the right axis.

The $J/\psi$ nuclear modification factor versus transverse momentum for |y| < 1 and $p_T$ < 5 GeV/c for 0-60% centrality Au+Au collisions (solid circles). The data are compared with STAR high-$p_T$ (5 < $p_T$ < 10 GeV/c) results [9] and PHENIX results [8] in |y| < 0.35 (open squares). The statistical and systematic uncertainties on the baseline $J/\psi$ cross section in p+p collisions are indicated by the hatched and solid bands, respectively. Boxes on the vertical axes represent the uncertainty on $N_{coll}$ combined with the uncertainty on the inelastic cross section in p+p collisions

The $J/\psi$ nuclear modification factor versus transverse momentum for |y| < 1 and $p_T$ < 5 GeV/c for 0-20% centrality Au+Au collisions (solid circles). The data are compared with STAR high-$p_T$ (5 < $p_T$ < 10 GeV/c) results [9] and PHENIX results [8] in |y| < 0.35 (open squares). The statistical and systematic uncertainties on the baseline $J/\psi$ cross section in p+p collisions are indicated by the hatched and solid bands, respectively. Boxes on the vertical axes represent the uncertainty on $N_{coll}$ combined with the uncertainty on the inelastic cross section in p+p collisions

The $J/\psi$ nuclear modification factor versus transverse momentum for |y| < 1 and $p_T$ < 5 GeV/c for 20-40% centrality Au+Au collisions (solid circles). The data are compared with STAR high-$p_T$ (5 < $p_T$ < 10 GeV/c) results [9] and PHENIX results [8] in |y| < 0.35 (open squares). The statistical and systematic uncertainties on the baseline $J/\psi$ cross section in p+p collisions are indicated by the hatched and solid bands, respectively. Boxes on the vertical axes represent the uncertainty on $N_{coll}$ combined with the uncertainty on the inelastic cross section in p+p collisions

The $J/\psi$ nuclear modification factor versus transverse momentum for |y| < 1 and $p_T$ < 5 GeV/c for 40-60% centrality Au+Au collisions (solid circles). The data are compared with STAR high-$p_T$ (5 < $p_T$ < 10 GeV/c) results [9] and PHENIX results [8] in |y| < 0.35 (open squares). The statistical and systematic uncertainties on the baseline $J/\psi$ cross section in p+p collisions are indicated by the hatched and solid bands, respectively. Boxes on the vertical axes represent the uncertainty on $N_{coll}$ combined with the uncertainty on the inelastic cross section in p+p collisions

The $J/\psi$ invariant yield and nuclear modification factor as a function of centrality for |y| < 1 in Au+Au collisions at $\sqrt{s_{NN}}$ = 200 GeV.

The $J/\psi$ invariant yield $Bd^2N/(2\pi p_Tdydp_T) [(GeV/c)^{-2}]$ and nuclear modification factor as a function of transverse momentum for |y| < 1 in Cu+Cu collisions at $\sqrt{s_{NN}}$ = 200 GeV.

The $J/\psi$ invariant yield and nuclear modification factor for |y| < 1 in Cu+Cu collisions at $\sqrt{s_{NN}}$ = 200 GeV.

Nuclear modification factor $R_{dA}$ for $\pi^0$, d + Au, compared to the STAR $\pi^{+-}$ [23,24] and PHENIX $\pi^0$ measurements [27,28]. Nucleon-nucleon inelastic cross section $\sigma^{NN}$ = 42 mb and expected number of collisions $<N_{coll}>$ = 7.5 +- 0.4 from Glauber model. Shaded bands in plot are $p_T$-correlated systematic uncertainties and the error bars are statistical uncertainties. Normalization uncertainty of 14.0% indicated by a shaded band around unity.

Nuclear modification factor $R_{dA}$ for eta, d + Au, compared to PHENIX $\eta$ measurements [27,28]. Nucleon-nucleon inelastic cross section $\sigma^{NN}$ = 42 mb and expected number of collisions $<N_{coll}>$ = 7.5 +- 0.4 from Glauber model. Shaded bands in plot are $p_T$-correlated systematic uncertainties and the error bars are statistical uncertainties. Normalization uncertainty of 14.0% indicated by a shaded band around unity.

Nuclear modification factor $R_{CP}$ for $\pi^0$ measured in d + Au collisions, compared to STAR $\pi^{+-}$ measurements [24]. Peripheral d + Au collisions were used where $R_{CP}$ = ratio of particle production in 40-100% centrality (P) events and 0-20% centrality (C) events. Shaded bands in plot are $p_T$-correlated systematic uncertainties and the error bars are statistical uncertainties. Normalization uncertainty of 11.0% indicated by a shaded band around unity.

Direct photon yield in p + p collisions at $\sqrt{s_{NN}}$ = 200 GeV in terms of the double ration $R_{\gamma}$. Shaded bands in plot are $p_T$-correlated systematic uncertainties and the error bars are statistical uncertainties. The curves correspond to NLO pQCD calculations of the differential cross sections for direct photon [68] and $\pi^0$ [52] production in p + p collisions for different factorization scales $\mu$ (the upper pQCD curve corresponds to $\mu$ = $p_T$/2). The upper limit of the fractional neutral hadron contamination $C_0$ is shown as the shaded band at $R_{\gamma}$ = 0.

Direct photon yield in d + Au collisions at $\sqrt{s_{NN}}$ = 200 GeV in terms of the double ration $R_{\gamma}$. Shaded bands in plot are $p_T$-correlated systematic uncertainties and the error bars are statistical uncertainties. The curves correspond to NLO pQCD calculations of the differential cross sections for direct photon [68] and $\pi^0$ [52] production in p + p collisions for different factorization scales $\mu$ (the upper pQCD curve corresponds to $\mu$ = $p_T$/2). The upper limit of the fractional neutral hadron contamination $C_0$ is shown as the shaded band at $R_{\gamma}$ = 0.

Cross sections for direct photon production at midrapidity in p + p and d + Au collisions at $\sqrt{s_{NN}}$ = 200 GeV, compared to the PHENIX measurement [29] and to the NLO pQCD calculation [68], which was scaled with $<T_{dA}>$ [Eq. (23)] in case of d + Au collisions. The error bars are statistical the shaded bands are $p_T$-correlated systematic uncertainties. The arrows correspond to the 95% confidence limits, as defined in the text. Normalization uncertainties of 11.7% for p+p and 5.3% for d+Au are not shown. Separate columns in the table show upper 95% confidence limits. The 95% confidence limits for the cross section are used when $R_{\gamma}$ did not correspond to a significant direct photon signal, assuming that the statistical and systematic errors both followed a Gaussian distribution, and using the fact that $R_{\gamma}\geq 1$ by definition.

Transverse momentum distribution for $\pi^+$ production in d+Au collisions with centrality 20-40% in the mid rapidity region, $|y|<0.5$.

Transverse momentum distribution for $\pi^+$ production in d+Au collisions with centrality 40-100% in the mid rapidity region, $|y|<0.5$.

Transverse momentum distribution for $\pi^-$ production in d+Au minbias events in the mid rapidity region, $|y|<0.5$.

Transverse momentum distribution for $\pi^-$ production in p+p NSD events in the mid rapidity region, $|y|<0.5$.

Transverse momentum distribution for $\pi^-$ production in d+Au collisions with centrality 0-20% in the mid rapidity region, $|y|<0.5$.

Transverse momentum distribution for $\pi^-$ production in d+Au collisions with centrality 20-40% in the mid rapidity region, $|y|<0.5$.

Transverse momentum distribution for $\pi^-$ production in d+Au collisions with centrality 40-100% in the mid rapidity region, $|y|<0.5$.

Transverse momentum distribution for proton production in d+Au minbias events in the mid rapidity region, $|y|<0.5$.

Transverse momentum distribution for proton production in p+p NSD events in the mid rapidity region, $|y|<0.5$.

Transverse momentum distribution for proton production in d+Au collisions with centrality 0-20% in the mid rapidity region, $|y|<0.5$.

Transverse momentum distribution for proton production in d+Au collisions with centrality 20-40% in the mid rapidity region, $|y|<0.5$.

Transverse momentum distribution for proton production in d+Au collisions with centrality 40-100% in the mid rapidity region, $|y|<0.5$.

Transverse momentum distribution for pbar production in d+Au minbias events in the mid rapidity region, $|y|<0.5$.

Transverse momentum distribution for pbar production in p+p NSD events in the mid rapidity region, $|y|<0.5$.

Transverse momentum distribution for pbar production in d+Au collisions with centrality 0-20% in the mid rapidity region, $|y|<0.5$.

Transverse momentum distribution for pbar production in d+Au collisions with centrality 20-40% in the mid rapidity region, $|y|<0.5$.

Transverse momentum distribution for pbar production in d+Au collisions with centrality 40-100% in the mid rapidity region, $|y|<0.5$.

Nuclear modification factors $R_{dAu}$ for $\pi^+$ + $\pi^-$ production in the mid rapidity region, $|y|<0.5$. There is an overall additional normalization uncertainty of the order of 17%. For the measurement of $R_{dAu}$ there is an additional uncertainty of 5% due to uncertainty on $N_{bin}$ for minbias collisions.

Nuclear modification factors $R_{dAu}$ for $p + \bar{p}$ production in the mid rapidity region, $|y|<0.5$. There is an overall additional normalization uncertainty of the order of 17%. For the measurement of $R_{dAu}$ there is an additional uncertainty of 5% due to uncertainty on $N_{bin}$ for minbias collisions.

Ratios of $ \pi^-/\pi^+ $ in DEUT AU and P P minbias collisions in the mid rapidity region, $|y|<0.5$. In addition there are approximately 7% correlated errors for the ratios in P P collisions and about 10% in the DEUT AU collisions.

Ratios of $ \bar{p}/p $ in DEUT AU and P P minbias collisions in the mid rapidity region, $|y|<0.5$. In addition there are approximately 7% correlated errors for the ratios in P P collisions and about 10% in the DEUT AU collisions.

Ratios of $ p/\pi^+ $ in DEUT AU and P P minbias collisions in the mid rapidity region, $|y|<0.5$. In addition there are approximately 7% correlated errors for the ratios in P P collisions and about 10% in the DEUT AU collisions.

Ratios of $ \bar{p}/\pi^- $ in DEUT AU and P P minbias collisions in the mid rapidity region, $|y|<0.5$. In addition there are approximately 7% correlated errors for the ratios in P P collisions and about 10% in the DEUT AU collisions.